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knowledge graph developper
knowledge graph developper
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knowledge graph developper

jaime benchimol's profile picture
Posted by jaime benchimol
2 - 7 yrs
₹6L - ₹12L / yr
Remote only
Skills
RDF
Bioinformatics

Pattern Agentix is seeking a skilled engineer to design and develop a comprehensive knowledge graph that spans multiple biological domains—including molecular biology, biochemistry, biophysics, immunology, virology, pharmacology, and computational biology. The goal is to integrate heterogeneous datasets (ontologies, public databases, scientific literature) into a scalable, semantically rich graph that supports hypothesis generation and interdisciplinary research.


Responsibilities:

• Architecture & Design:

- Develop a scalable knowledge graph architecture using graph databases

- Design data models to capture entities (e.g., genes, proteins, chemical compounds, immune markers) and their relationships.


• Data Integration & Curation:

- Integrate data from domain-specific ontologies (e.g., Gene Ontology, ChEBI) and public repositories (e.g., UniProt, PDB).

- Build API connectors and automation pipelines for data ingestion.

- Leverage NLP tools to extract relationships from scientific literature with validation by domain experts.


• Collaboration & Documentation:

- Work closely with interdisciplinary teams and domain experts to ensure semantic accuracy.

- Document data models, integration methods, and curation guidelines.


Requirements:

• Proven experience in knowledge graph development and graph databases

• Strong programming skills (Python, Java, or similar) and experience with API development.

• Familiarity with semantic web technologies (RDF, ) and ontology management tools  

• Solid background in bioinformatics, computational biology, or related disciplines.

• Demonstrated ability to work with heterogeneous data sources and interdisciplinary projects.


Contract

We are seeking part time or full time on contract and will compensate to local norms. 

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Shubham Vishwakarma

Full Stack Developer - Averlon
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About Pattern Agentix

Founded :
2024
Type :
Product
Size :
0-20
Stage :
Raised funding

About

N/A

Company social profiles

N/A

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Shubham Vishwakarma

Full Stack Developer - Averlon
I had an amazing experience. It was a delight getting interviewed via Cutshort. The entire end to end process was amazing. I would like to mention Reshika, she was just amazing wrt guiding me through the process. Thank you team.
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