
Pattern Agentix is seeking a skilled engineer to design and develop a comprehensive knowledge graph that spans multiple biological domains—including molecular biology, biochemistry, biophysics, immunology, virology, pharmacology, and computational biology. The goal is to integrate heterogeneous datasets (ontologies, public databases, scientific literature) into a scalable, semantically rich graph that supports hypothesis generation and interdisciplinary research.
Responsibilities:
• Architecture & Design:
- Develop a scalable knowledge graph architecture using graph databases
- Design data models to capture entities (e.g., genes, proteins, chemical compounds, immune markers) and their relationships.
• Data Integration & Curation:
- Integrate data from domain-specific ontologies (e.g., Gene Ontology, ChEBI) and public repositories (e.g., UniProt, PDB).
- Build API connectors and automation pipelines for data ingestion.
- Leverage NLP tools to extract relationships from scientific literature with validation by domain experts.
• Collaboration & Documentation:
- Work closely with interdisciplinary teams and domain experts to ensure semantic accuracy.
- Document data models, integration methods, and curation guidelines.
Requirements:
• Proven experience in knowledge graph development and graph databases
• Strong programming skills (Python, Java, or similar) and experience with API development.
• Familiarity with semantic web technologies (RDF, ) and ontology management tools
• Solid background in bioinformatics, computational biology, or related disciplines.
• Demonstrated ability to work with heterogeneous data sources and interdisciplinary projects.
Contract
We are seeking part time or full time on contract and will compensate to local norms.

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- Development and unit testing of web applications including back-end (microservices), maintenance & level 3 support of the same
- Assist Project Managers, Business Analysts, and Tech Lead in project planning (provide estimates, risk analysis, requirements analysis, technical options)
- Software Architecture
- Involvement in full life cycle of projects (including requirement analysis and system design, development and support if required)
- Support and work collaboratively with teams across areas of design, development, quality assurance and operations
- Commit your knowledge and experience into team success
- A small amount of travel (when needed) to work with other offices
- Attend meetings to discuss and demonstrate solutions at both technical and business level
REQUIRED SKILLS AND EXPERIENCE
- 5+ years web application development experience
- 3+ years developing with Python
- 3+ years developing with C# and .NET Framework 4.x
- Experience with ASP.NET MVC, ASP.NET WebAPI 2, LINQ, and WCF
- Dependency Injection and other common ASP.NET MVC design patterns
- Experience with API design and development using REST
- Experience with performance optimization
- Experience integrating security best practices into the SDLC
- Experience with object-oriented programming (OOP) and OOP patterns
- Experience with Git
- 1+ years of Agile development experience
- Experience manipulating and working with data in a variety of forms: csv, xml, json, structured and unstructured
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DESIRABLE SKILLS AND EXPERIENCE
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- Experience with Object Mapping Frameworks (AutoMapper, etc) is a plus
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- AWS-based development is a plus
- Knowledge of Flask is a plus.
PERSONAL SKILLS
- Clever personality
- Strong spirit skills set: conflict resistant, self -motivated, result-oriented, responsible, honest, “open”, courageous





