Pattern Agentix
https://www.patternagentix.comAbout
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We are seeking a Bioinformatician with a strong background in proteomics, and proven experience with biological ontologies. The successful candidate will analyze outputs from pre-processed biological pipelines and support their integration into a biomedical knowledge graph.
Responsibilities:
Review and interpret proteomics datasets from existing pipelines
Leverage biological ontologies (e.g., GO, DO, HPO) to structure and standardize biological entities
Assist in designing and building components of a biological knowledge graph
Collaborate with computational biologists, data scientists, and software engineers
Document processes and contribute to reproducibility and data governance standards
Qualifications:
MSc or PhD in Bioinformatics, Computational Biology, or a related field
Strong knowledge of proteomics workflows
Experience working with biological ontologies and controlled vocabularies
Familiarity with RDF, OWL, or other semantic web technologies is a plus
Proficiency in Python, R, or similar data analysis tools
Excellent analytical and communication skills
Preferred Experience:
Previous work with knowledge graphs or biomedical data integration
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The recruiter has not been active on this job recently. You may apply but please expect a delayed response.
We are seeking a Bioinformatician with a strong background in genomics and transcriptomics, and proven experience with biological ontologies. The successful candidate will analyze outputs from pre-processed biological pipelines and support their integration into a biomedical knowledge graph.
Responsibilities:
Review and interpret genomics and transcriptomics datasets from existing pipelines
Leverage biological ontologies (e.g., GO, DO, HPO) to structure and standardize biological entities
Assist in designing and building components of a biological knowledge graph
Collaborate with computational biologists, data scientists, and software engineers
Document processes and contribute to reproducibility and data governance standards
Qualifications:
MSc or PhD in Bioinformatics, Computational Biology, or a related field
Strong knowledge of genomics and transcriptomics workflows
Experience working with biological ontologies and controlled vocabularies
Familiarity with RDF, OWL, or other semantic web technologies is a plus
Proficiency in Python, R, or similar data analysis tools
Excellent analytical and communication skills
Preferred Experience:
Previous work with knowledge graphs or biomedical data integration
The recruiter has not been active on this job recently. You may apply but please expect a delayed response.
Pattern Agentix is seeking a skilled engineer to design and develop a comprehensive knowledge graph that spans multiple biological domains—including molecular biology, biochemistry, biophysics, immunology, virology, pharmacology, and computational biology. The goal is to integrate heterogeneous datasets (ontologies, public databases, scientific literature) into a scalable, semantically rich graph that supports hypothesis generation and interdisciplinary research.
Responsibilities:
• Architecture & Design:
- Develop a scalable knowledge graph architecture using graph databases
- Design data models to capture entities (e.g., genes, proteins, chemical compounds, immune markers) and their relationships.
• Data Integration & Curation:
- Integrate data from domain-specific ontologies (e.g., Gene Ontology, ChEBI) and public repositories (e.g., UniProt, PDB).
- Build API connectors and automation pipelines for data ingestion.
- Leverage NLP tools to extract relationships from scientific literature with validation by domain experts.
• Collaboration & Documentation:
- Work closely with interdisciplinary teams and domain experts to ensure semantic accuracy.
- Document data models, integration methods, and curation guidelines.
Requirements:
• Proven experience in knowledge graph development and graph databases
• Strong programming skills (Python, Java, or similar) and experience with API development.
• Familiarity with semantic web technologies (RDF, ) and ontology management tools
• Solid background in bioinformatics, computational biology, or related disciplines.
• Demonstrated ability to work with heterogeneous data sources and interdisciplinary projects.
Contract
We are seeking part time or full time on contract and will compensate to local norms.
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About the company
We’re Hiring Humans, not Ninjas 😇
Disclaimer: Only for serious folks. Work that challenges, excites, scares you and lets you go to bed satisfied!
- Project Manager (5+ Years)
- Product Manager (4+ Years)
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- Frontend Developer Interns (Freshers)
- Backend Developer Interns (Freshers)
- Reactjs Developer (2 years)
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- Python Developer (2 years)
- Senior Reactjs Developer (4+ years)
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Note: In case you don't see a role that you’d fit in, but would love to be a part of the team at some point, we’d love to stay connected. Send us your details at [email protected]
Who we are:
F22 Labs was started in 2014 by Murtuza and Hari, 2 childhood friends who always dreamt of starting a business of their own. After working at leading startups initially in their careers, they decided to take the plunge.
Over the last 7 years, we’ve been fortunate and blessed to have worked with 250+ entrepreneurs, who have trusted us with their dream of building their startups. Some of them include Hollywood celebrities like BJ Novak and Fortune 500s like Pizza Hut Inc.
Some of our products have gone on to be used, loved and have received investment from Charlie Cheever(Cofounder of Quora), Snoop Dog(does he even need an introduction?), Evan Williams (Cofounder of Twitter) and have been nominated for awards like the Webbys.
F22 Labs has won the Top 10 Software development company awards from highly respected Clutch.co for multiple years.
One cool thing about working at F22 Labs is you can never be bored. We’re working on various products cutting across different industries like: HealthCare, Non Profits, Entertainment, B2B SaaS, Ecommerce, Fashion, Sports, Travel, Fintech, Marketplaces, EdTech, LegalTech, IOT.
We have presented our products at international conventions like WebSummit Lisbon, RiseConf HongKong, Collision Conf New Orleans, Pizza Expo Las Vegas
What we do:
We build beautiful, robust and scalable web and mobile applications for idea stage founders and growth stage startups based out of USA, Canada, Mexico, Middle East, India, Nigeria, South Africa, Singapore etc.
Our Core Values:
- Honesty & Transparency: Speak your mind and do what feels right.
- Empathy: Be kind. Listen Intently. Trust by default.
- Stay Hungry, Stay Foolish: Have childlike curiosity and hunger to learn.
- Hustle Hard: Do more with less.
- Teach, don’t preach: Knowledge grows when shared.
Perks:
- State of the Art gadgets
- Complete Health coverage for you and your family
- Flexible work timings
- Top-notch Healthcare
- Care & Appreciation
- Flexible Schedules
- Supercharged Learning
- TechTalks Sessions
- Amazing Office Indoor Games
- Cool & Fun Working Enviornment
- Accommodation & Meal for Relocation
Our Hiring process:
- A Profile Review: Resume, Portfolios, personal websites, Github, anything else you want to share with us.
- A Technical task that relates to the work you will be doing
- A Final round of interview
- An Offer and onboard you are!
Know more about us @F22Labs:
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Joining the team behind the world’s most trusted artifact firewall isn’t just a job - it’s a mission.
🧩 What the Company Does
This company provides software tools to help development teams manage open-source code securely and efficiently. Its platform covers artifact management, automated policy enforcement, vulnerability detection, software bill of materials (SBOM) management, and AI-powered risk analysis. It's used globally by thousands of enterprises and millions of developers to secure their software supply chains.
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