

Pattern Agentix
https://www.patternagentix.comAbout
Company social profiles
Jobs at Pattern Agentix
We are seeking a Bioinformatician with a strong background in proteomics, and proven experience with biological ontologies. The successful candidate will analyze outputs from pre-processed biological pipelines and support their integration into a biomedical knowledge graph.
Responsibilities:
Review and interpret proteomics datasets from existing pipelines
Leverage biological ontologies (e.g., GO, DO, HPO) to structure and standardize biological entities
Assist in designing and building components of a biological knowledge graph
Collaborate with computational biologists, data scientists, and software engineers
Document processes and contribute to reproducibility and data governance standards
Qualifications:
MSc or PhD in Bioinformatics, Computational Biology, or a related field
Strong knowledge of proteomics workflows
Experience working with biological ontologies and controlled vocabularies
Familiarity with RDF, OWL, or other semantic web technologies is a plus
Proficiency in Python, R, or similar data analysis tools
Excellent analytical and communication skills
Preferred Experience:
Previous work with knowledge graphs or biomedical data integration
Read less
We are seeking a Bioinformatician with a strong background in genomics and transcriptomics, and proven experience with biological ontologies. The successful candidate will analyze outputs from pre-processed biological pipelines and support their integration into a biomedical knowledge graph.
Responsibilities:
Review and interpret genomics and transcriptomics datasets from existing pipelines
Leverage biological ontologies (e.g., GO, DO, HPO) to structure and standardize biological entities
Assist in designing and building components of a biological knowledge graph
Collaborate with computational biologists, data scientists, and software engineers
Document processes and contribute to reproducibility and data governance standards
Qualifications:
MSc or PhD in Bioinformatics, Computational Biology, or a related field
Strong knowledge of genomics and transcriptomics workflows
Experience working with biological ontologies and controlled vocabularies
Familiarity with RDF, OWL, or other semantic web technologies is a plus
Proficiency in Python, R, or similar data analysis tools
Excellent analytical and communication skills
Preferred Experience:
Previous work with knowledge graphs or biomedical data integration
Pattern Agentix is seeking a skilled engineer to design and develop a comprehensive knowledge graph that spans multiple biological domains—including molecular biology, biochemistry, biophysics, immunology, virology, pharmacology, and computational biology. The goal is to integrate heterogeneous datasets (ontologies, public databases, scientific literature) into a scalable, semantically rich graph that supports hypothesis generation and interdisciplinary research.
Responsibilities:
• Architecture & Design:
- Develop a scalable knowledge graph architecture using graph databases
- Design data models to capture entities (e.g., genes, proteins, chemical compounds, immune markers) and their relationships.
• Data Integration & Curation:
- Integrate data from domain-specific ontologies (e.g., Gene Ontology, ChEBI) and public repositories (e.g., UniProt, PDB).
- Build API connectors and automation pipelines for data ingestion.
- Leverage NLP tools to extract relationships from scientific literature with validation by domain experts.
• Collaboration & Documentation:
- Work closely with interdisciplinary teams and domain experts to ensure semantic accuracy.
- Document data models, integration methods, and curation guidelines.
Requirements:
• Proven experience in knowledge graph development and graph databases
• Strong programming skills (Python, Java, or similar) and experience with API development.
• Familiarity with semantic web technologies (RDF, ) and ontology management tools
• Solid background in bioinformatics, computational biology, or related disciplines.
• Demonstrated ability to work with heterogeneous data sources and interdisciplinary projects.
Contract
We are seeking part time or full time on contract and will compensate to local norms.

Similar companies
About the company
Jobs
1
About the company
Fluxon (www.fluxon.com) is a white-glove product studio trusted by world leading brands and high-growth startups to build top-notch software. We’re passionate about our work, obsessed with quality and focused on results. Your company’s success is at the heart of what we do.
Contact us at [email protected]
Website
Jobs
1
About the company
Devcare Solution is a place where a best-in-class working environment, professional management, and opportunities to learn exist bundled with exceptional rewards. It is ready to take more on board for all those who deserve a dream career. The team is full of good spirits complimenting each one's brilliance at workplace. Needless to say, about the interesting projects, you for sure will gain an enriching positive experience every moment.
Jobs
18
About the company
We are hiring for multiple clients
Jobs
1
About the company
Jobs
5
About the company
Jobs
2
About the company
OIP Insurtech streamlines insurance operations and optimizes workflows by combining deep industry knowledge with advanced technology. Established in 2012, OIP InsurTech partners with carriers, MGAs, program managers, and TPAs in the US, Canada, and Europe, especially the UK.
With 1,200 professionals serving over 100 clients, we deliver insurance process automation, custom software development, high-quality underwriting services, and skilled tech staff to augment our clients.
While saving time and money is the immediate win, the real game-changer is giving our clients the freedom to grow their books, run their businesses, and focus on what they love. We’re proud to support them on this journey and make a positive impact on the industry!
Jobs
2
About the company
Jobs
6
About the company
Jobs
7
About the company
Pattern Agentix is a next-generation research platform designed to transform the way interdisciplinary research is conducted. By integrating enriched datasets, advanced technologies, and customizable workflows, the platform empowers researchers to achieve deeper insights and faster discoveries. From genomics to material science, Pattern Agentix is redefining the future of scientific innovation
Jobs
0